PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03450.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 300aa    MW: 33200.7 Da    PI: 9.2001
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03450.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34571482102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d++++++isws  g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we
  Zmw_sc03450.1.g00040.1.sm.mkhc  57 FLTKVYDMVSDPATDSIISWSPGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 126
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     ++++ F k++k+ll++ikrkk+
  Zmw_sc03450.1.g00040.1.sm.mkhc 127 WANEGFVKDQKHLLKTIKRKKK 148
                                     ********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5653146IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.92E-3553146IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3754146IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3157146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-195780IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-19108120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGSKKKSPQP AAAAAEGTST AAGEAPGDVG ALPAGKGPAP APAPAVVVPK PPDVAPFLTK  60
VYDMVSDPAT DSIISWSPGG GSFVIWDSHA FERDLLPRHF KHNHFTSFIR QLNTYGFHKV  120
DPDRWEWANE GFVKDQKHLL KTIKRKKKIS QETPDPPQAP VKPAPGTETI EIGNYGGLEK  180
EVEKLKRDKT LLMQQLVDLR HYQQSSNLEL QNLIQRLHVM EQNQQQMMAL LAIAVQNPDF  240
LNQLVQQQRR SNLWNDDGSK KRRFIALEQG PAAEQETSGA SAPIIQYRPP VPAIANEYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-253214614129Heat shock factor protein 1
5d5v_B1e-253214614129Heat shock factor protein 1
5d5v_D1e-253214614129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985150.11e-165PREDICTED: heat stress transcription factor A-9-like
SwissprotQ10PR41e-141HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLK4AAD31e-165K4AAD3_SETIT; Uncharacterized protein
TrEMBLK4ACW01e-165K4ACW0_SETIT; Uncharacterized protein
STRINGSi035840m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039